Giant axonal neuropathy locus refinement to a < 590 kb critical interval


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Cavalier L., BenHamida C., Amouri R., Belal S., Bomont P., Lagarde N., ...More

EUROPEAN JOURNAL OF HUMAN GENETICS, vol.8, no.7, pp.527-534, 2000 (SCI-Expanded) identifier identifier identifier

  • Publication Type: Article / Article
  • Volume: 8 Issue: 7
  • Publication Date: 2000
  • Doi Number: 10.1038/sj.ejhg.5200476
  • Journal Name: EUROPEAN JOURNAL OF HUMAN GENETICS
  • Journal Indexes: Science Citation Index Expanded (SCI-EXPANDED), Scopus
  • Page Numbers: pp.527-534
  • Keywords: giant axon, Bac/Yac contig, homozygosity mapping, linkage disequilibrium, haplotype analysis, GAN gene, POLYMERASE CHAIN-REACTION, DNA POLYMORPHISMS, PHYSICAL MAP, MUTATIONS, GENE
  • Gazi University Affiliated: Yes

Abstract

Giant axonal neuropathy (GAN) is a rare autosomal recessive neurodegenerative disorder, characterised clinically by the development of chronic distal polyneuropathy during childhood, mental retardation, kinky or curly hair, skeletal abnormalities and, ultrastructurally, by axons in the central and peripheral nervous systems distended by masses of tightly woven neurofilaments. We recently localised the CAN locus in 16q24.1 to a 5-cM interval between the D16S507 and D16S511 markers by homozygosity mapping in three consanguineous Tunisian families. We have now established a contig-based physical map of the region comprising YACs and BACs where we have placed four genes, ten ESTs, three STSs and two additional microsatellite markers, and where we have identified six new SSCP polymorphisms and six new microsatellite markers. Using these markers, we have refined the position of our previous flanking recombinants. We also identified a shared haplotype between two Tunisian families and a small region of homozygosity in a Turkish family with distant consanguinity, both suggesting the occurrence of historic recombinations and supporting the conclusions based on the phase-known recombinations. Taken together, these results allow us to establish a transcription map of the region, and to narrow down the GAN position to a < 590 kb critical interval, an important step toward the identification of the defective gene.