In Turkey approximately 45 million tons of coals are burned in a year and 19.3 million tons of fly ash have emerged. The bioremediation of heavy metals or different elements from fly ash makes them bio-available. However, in previous studies, requiring of long operational time and failing to show tolerance to high pulp densities of fly ash of selected fungal species makes them impractical. In this work, bioremediation of fly ash by new isolated fungi Fusarium oxysporum and Penicillium glabrum were investigated in one step and two step bioremediation process. Ca, Si, Fe and S were found to be considerable amount in studied fly ashes by ED-XRF element analysis. The bioremediation yields of Mo (100%), S (64.36%) Ni (50%) and Cu (33.33%) by F. oxysporum were high. The remediated elements by P. glabrum in-fly ash were Mo (100%), S (57.43%), Ni (25%), Si (24.66%), V (12.5%), Ti (5%) and Sr (3.2%). The isolation of high fly ash resistant fungi and reduction of the bioremediation time will allow the practical applications of the bioremediation technology when it is scaled up. (C) 2017 Elsevier Ltd. All rights reserved.